PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g23470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 287aa    MW: 31941.5 Da    PI: 7.8803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g23470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00190112123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  CA06g23470  90 YECKTCNRTFPSFQALGGHRTSH 112
                 99*********999998888777 PP

2zf-C2H213.80.00017179201123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  CA06g23470 179 HECSICGAEFSSGQALGGHMRRH 201
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-1389114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-789112No hitNo description
PROSITE profilePS5015710.40890117IPR007087Zinc finger, C2H2
SMARTSM003550.05990112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-7174201No hitNo description
PROSITE profilePS501579.743179201IPR007087Zinc finger, C2H2
PfamPF139127.2E-13179203IPR007087Zinc finger, C2H2
SMARTSM003550.01179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFSEDSIDR TLVFKGKRSK RPRQFMAIST SSTSEEDEDM ANCLILLAQS GRCEKLQVET  60
TERKMVKISS RKFAEMATTS TGSKAGFYVY ECKTCNRTFP SFQALGGHRT SHKKIKTVTE  120
DKKSTADSNS QLQQGHHHQQ QLLHQHEEKS SRIITPSVNY STGNSNSVAN LINIKPKIHE  180
CSICGAEFSS GQALGGHMRR HRPPTITTTA TNTKNITVDE ISNTSDNSSH DENSKENKPK  240
IFLSLDLNLP ASPEDHDHQR DAANFEFSAN QQNLMFSAAA LVDCHY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576894.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLK4C9J61e-139K4C9J6_SOLLC; Uncharacterized protein
STRINGSolyc06g074800.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-43C2H2 family protein